ABOUT THIS RECORDspecies: Citrus unshiu
miRNA family: MIR408
source: miRNEST
Taxonomy by NCBI:
Citrus unshiu Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGGGGAACAGGCAGAGCATGG miRNA* ATGCGCTGCCTCTTCCCTGGC mismatches: 2 bulges: 0 |
pre-miRNA
CGAGACAAAAGACGGGGAACAGGCAGAGCATGGATGGAACCATTAACAGGTTCTCTGTTTTGGCTCCTCCCATGCGCTGCCTCTTCCCTGGCTCTCTGCC
dot-bracket secondary structure
)((((.......(((((((.((((((.((((((..(((.(((..((((((...)))))).))).)))..)))))).)))))).)))))))..))))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CGAGACAAAAGACGGGGAACAGGCAGAGCATGGATGGAACCATTAACAGGTTCTCTGTTTTGGCTCCTCCCATGCGCTGCCTCTTCCCTGGCTCTCTGCC
dot-bracket secondary structure
)((((.......(((((((.((((((.((((((..(((.(((..((((((...)))))).))).)))..)))))).)))))).)))))))..))))....
SIMILARITIES| miRBase csi-MIR408: 5.0E-49 PMRD cpt-miR408: 2.0E-48 microPC miR408: 1.0E-15 | UniProt no hits RFAM 8MIR408: 6.0E-15 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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