ABOUT THIS RECORDspecies: Coffea canephora
miRNA family: MIRf345
source: miRNEST
Taxonomy by NCBI:
Coffea canephora Coffea Coffeeae Ixoroideae Rubiaceae Gentianales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CACCAAAGGCCTCTGCCCTTC miRNA* AGGGCGGAGCTTTTGGTTTT mismatches: 1 bulges: 1 |
pre-miRNA
ACTGGGGGGGACACCAAAGGCCTCTGCCCTTCCATCCCTTAAATAGAGAGGGAGGGCGGAGCTTTTGGTTTTTTCATGTT
dot-bracket secondary structure
......(((((.(((((((((.(((((((((((.((.((.....)).)))))))))))))))))))))).))))).....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ACTGGGGGGGACACCAAAGGCCTCTGCCCTTCCATCCCTTAAATAGAGAGGGAGGGCGGAGCTTTTGGTTTTTTCATGTT
dot-bracket secondary structure
......(((((.(((((((((.(((((((((((.((.((.....)).)))))))))))))))))))))).))))).....
SIMILARITIES| miRBase no hits PMRD ptc-miRf12309-akr: 0.000000000000001 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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