miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST000467
species: Coffea canephora
miRNA family: MIR2673
source: miRNEST

Taxonomy by NCBI:
Coffea canephora Coffea Coffeeae Ixoroideae Rubiaceae Gentianales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ACTCTTCCTCTTCTTCTTCTT

miRNA*
 AGAGGAAGGAGGAGGCG

mismatches: 3
bulges: 2
View larger
pre-miRNA
 GCAAGCAGAAAAAGAGAGAGAGAGAGGAAGGAGGAGGCGATGGTGTTCAATAGCCCGGTGGTGGTGGGCGTGGCCAACTTGTCGGCCAATGCGTGCCAAT
ACGTAGCCTGTAATCCCGAGAGACTGCCGGGCGATCAAGTCCTTTATCTTGTCTTCTGTGTCCCTTTTCAGCAGATCCGTCGTTTCGCGCTCTATCTCTG
GTCGGTCTTCTGCTTCCCTTTACCCCCTCACCATGGCCGAGACTACCACTATTACAACCCCCCACCTTCTCGCTACTATGCTAACTCTTCCTCTTCTTCT
TCTTCTTCTTCTTTATCCACCTC

dot-bracket secondary structure
.......((.((((((.(((((((((((((((((((....((((((....((((..((.(((((.(((..(((((........))))).((((((....)
)))))...((((((...((.(((.(((.(((((((((((........))))...(((((...........)))))...))))))).))).))).))..((
((.((((((..(((....................))).))))))))))..)))))).))).))))).))..))))..)))))).))))))))..))))))
)..)))).)))))).))......


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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