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ABOUT THIS RECORD

ID: MNEST000469
species: Coffea canephora
miRNA family: MIR396
source: miRNEST

Taxonomy by NCBI:
Coffea canephora Coffea Coffeeae Ixoroideae Rubiaceae Gentianales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTCCACAGCTTTCTTGAACTG

miRNA*
 GTTCAATAAAGCTGTGGGATG

mismatches: 1
bulges: 0
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pre-miRNA
 AGATATGGTCCTCTTCGTCTTATTCCACAGCTTTCTTGAACTGCATCTGGCTTTATCACTCCATGAATATGATTCTTGCAAGACTTCGGTGGAGGTGACGC
GATGATGGCGGTTCAATAAAGCTGTGGGATGATACTAATAGGATCAACA

dot-bracket secondary structure
)....(((((((.((.((.(((((((((((((((.((((((((((((..((.((((..((((((.....(((...((....))..))))))))))))).))
...))).))))))))).))))))))))))))).)).)).)))))))...


SIMILARITIES
miRBase csi-MIR396b: 8.0E-9

PMRD lja-miR396: 3.0E-8

microPC miR396: 1.0E-56		UniProt no hits

RFAM 6MIR396: 2.0E-6		most similar mature miRNAs

Identical with: miR396 from microPC (MNEST045064)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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