ABOUT THIS RECORDspecies: Coffea canephora
miRNA family: MIRf789
source: miRNEST
Taxonomy by NCBI:
Coffea canephora Coffea Coffeeae Ixoroideae Rubiaceae Gentianales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGCGGTTCAATAAAGCTGTGG miRNA* ACATCTTTCTTGAACTGCATC mismatches: 3 bulges: 0 |
pre-miRNA
CATATGGTCCTCTTCGTCTTATTCCACATCTTTCTTGAACTGCATCTGGCTTTATCACTCCATGAATATGATTCTTGCGAGACTTCGGAGGAGGTGACGCG
ATGATGGCGGTTCAATAAAGCTGTGGGATGATACTAATAGGATCAAC
dot-bracket secondary structure
)...(((((((.((.((.((((((((((.((((.((((((((((((..((.(((((.((((.........................))))..))))).)).
..))).))))))))).)))).)))))))))).)).)).)))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CATATGGTCCTCTTCGTCTTATTCCACATCTTTCTTGAACTGCATCTGGCTTTATCACTCCATGAATATGATTCTTGCGAGACTTCGGAGGAGGTGACGCG
ATGATGGCGGTTCAATAAAGCTGTGGGATGATACTAATAGGATCAAC
dot-bracket secondary structure
)...(((((((.((.((.((((((((((.((((.((((((((((((..((.(((((.((((.........................))))..))))).)).
..))).))))))))).)))).)))))))))).)).)).)))))))..
SIMILARITIES| miRBase gma-MIR396a: 5.0E-7 PMRD gma-miR396a: 5.0E-7 microPC miR396: 1.0E-56 | UniProt no hits RFAM 6MIR396: 3.0E-5 | most similar mature miRNAs |
Identical with: miR396 from microPC (MNEST045845) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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