ABOUT THIS RECORDspecies: Coffea canephora
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Coffea canephora Coffea Coffeeae Ixoroideae Rubiaceae Gentianales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATCATCATCATCATCTGTA miRNA* TGGGTAGTGTTGGAGATGGAG mismatches: 5 bulges: 0 |
pre-miRNA
GTATGTTGGAAATGGGTAGTGTTGGAGATGGAGGGCGGCGGCCTTCGGAGGGAGCAAGAGACTTGAGATTGTTCCAAGACCATCATCATCATCATCATCT
GTATTCGGCNGG
dot-bracket secondary structure
....((((((.((((((.(((.(((.((((((((((....))))))((..(((((((...........)))))))....))..)))).))).))).))))
)).))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
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GTATGTTGGAAATGGGTAGTGTTGGAGATGGAGGGCGGCGGCCTTCGGAGGGAGCAAGAGACTTGAGATTGTTCCAAGACCATCATCATCATCATCATCT
GTATTCGGCNGG
dot-bracket secondary structure
....((((((.((((((.(((.(((.((((((((((....))))))((..(((((((...........)))))))....))..)))).))).))).))))
)).))))))...
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
Source sequences
download this record
