ABOUT THIS RECORDspecies: Cryptomeria japonica
miRNA family: MIRf877
source: miRNEST
Taxonomy by NCBI:
Cryptomeria japonica Cryptomeria Cupressaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGGATGCTGCTGCTGTGGTGG miRNA* TGATGGCAGCGTGCGTTGAGC mismatches: 4 bulges: 2 |
pre-miRNA
TTCGTGTTGGCGTTTGTGTTCCTGATGGCAGCGTGCGTTGAGCTGGGGGATGCTGCTGCTGTGGTGGATGTGTACAGAATAATACA
dot-bracket secondary structure
...((((((...((((((.(((..(((((((((.(((((.........))))))))))))))...)))....)))))).)))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTCGTGTTGGCGTTTGTGTTCCTGATGGCAGCGTGCGTTGAGCTGGGGGATGCTGCTGCTGTGGTGGATGTGTACAGAATAATACA
dot-bracket secondary structure
...((((((...((((((.(((..(((((((((.(((((.........))))))))))))))...)))....)))))).)))))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
