ABOUT THIS RECORDspecies: Cryptomeria japonica
miRNA family: MIRf1094
source: miRNEST
Taxonomy by NCBI:
Cryptomeria japonica Cryptomeria Cupressaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCAGGCACCATTCCACACTGA miRNA* AGCATGGTTGGGTGTGCAG mismatches: 4 bulges: 2 |
pre-miRNA
AGAAGGTGTTTTTGCACAACCTTTTTGATAATGGCAGCACTTAGCATGGTTGGGTGTGCAGTTGCAGGTGTTCTTGTCTACAGAACAAGGCAATTCTATA
AGCAGGATATCTATCGCAAGTTCAATTCTGAAAGTAAAGAAGATAATAAAGGTTGAGATTCGCAGGCACCATTCCACACTGAAACTTCCACTACAACAAG
CAAGAGCACCTAATAATATGT
dot-bracket secondary structure
...((((((((((((......((.(((.((.(((.((...((((..(((.(((((.(((.(((((...((((((.......))))))..)))))(((...
(((....(((((.((.....((((....))))......)))))))......))).)))...))).)).)))..)))..))))..)).))).))))).)))
)))))))))))..........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AGAAGGTGTTTTTGCACAACCTTTTTGATAATGGCAGCACTTAGCATGGTTGGGTGTGCAGTTGCAGGTGTTCTTGTCTACAGAACAAGGCAATTCTATA
AGCAGGATATCTATCGCAAGTTCAATTCTGAAAGTAAAGAAGATAATAAAGGTTGAGATTCGCAGGCACCATTCCACACTGAAACTTCCACTACAACAAG
CAAGAGCACCTAATAATATGT
dot-bracket secondary structure
...((((((((((((......((.(((.((.(((.((...((((..(((.(((((.(((.(((((...((((((.......))))))..)))))(((...
(((....(((((.((.....((((....))))......)))))))......))).)))...))).)).)))..)))..))))..)).))).))))).)))
)))))))))))..........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
