ABOUT THIS RECORDspecies: Cucumis melo subsp. melo
miRNA family: miR168a
source: miRNEST
Taxonomy by NCBI:
Cucumis melo subsp. melo Cucumis melo Cucumis Cucurbitaceae Cucurbitales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCCGCCTTGCATCAACTGAAT miRNA* TCGCTTGGTGCAGGTCGGGAA mismatches: 2 bulges: 0 |
pre-miRNA
GCGGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACCGCTTCGCTCAGCCTACGGTTTACGTTTTGTCGTTGGCCGGTCCTTCTTCATTTTCCTTTTTTG
TTCTTCTCTGCTTTTGTTTTTTGCTTAATTTCTTTGCCGCTGTGCGGTGTTATCTTGTTGCGAAAATGTGTGGGCGAATTGGATCCCGCCTTGCATCAAC
TGAATCGAAAACCGTG
dot-bracket secondary structure
)..(((((.((..(((((.((((((((((.(((((.(((.(((((((((((.((((...........)))).))).((........((...........))
.......))((......(((((((.(((......((((((...)))))).....)))..))))))).)).)))))))).))).))))).)))))))))).
))))).))..))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCGGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACCGCTTCGCTCAGCCTACGGTTTACGTTTTGTCGTTGGCCGGTCCTTCTTCATTTTCCTTTTTTG
TTCTTCTCTGCTTTTGTTTTTTGCTTAATTTCTTTGCCGCTGTGCGGTGTTATCTTGTTGCGAAAATGTGTGGGCGAATTGGATCCCGCCTTGCATCAAC
TGAATCGAAAACCGTG
dot-bracket secondary structure
)..(((((.((..(((((.((((((((((.(((((.(((.(((((((((((.((((...........)))).))).((........((...........))
.......))((......(((((((.(((......((((((...)))))).....)))..))))))).)).)))))))).))).))))).)))))))))).
))))).))..))))).
SIMILARITIES| miRBase crt-MIR168: 2.0E-13 PMRD rco-miR168: 2.0E-13 microPC miR168: 2.0E-10 | UniProt no hits RFAM 8MIR168: 4.0E-12 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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