ABOUT THIS RECORDspecies: Cucumis melo subsp. melo
miRNA family: MIR166
source: miRNEST
Taxonomy by NCBI:
Cucumis melo subsp. melo Cucumis melo Cucumis Cucurbitaceae Cucurbitales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCC miRNA* AATGTTGTCTGGCTCGAGG mismatches: 3 bulges: 0 |
pre-miRNA
ATTGTTTTGAGGGGAATGTTGTCTGGCTCGAGGACACTTTTATTCGATCTTTTGATTTTTGTGTTTATATTTAGTGTCGTCGGACCAGGCTTCATTCCCCC
CAATTAA
dot-bracket secondary structure
).((..(((.((((((((..((((((.((((.((((((..(((.((...............))...)))...)))))).)))).))))))..)))))))).
))).)).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATTGTTTTGAGGGGAATGTTGTCTGGCTCGAGGACACTTTTATTCGATCTTTTGATTTTTGTGTTTATATTTAGTGTCGTCGGACCAGGCTTCATTCCCCC
CAATTAA
dot-bracket secondary structure
).((..(((.((((((((..((((((.((((.((((((..(((.((...............))...)))...)))))).)))).))))))..)))))))).
))).)).
SIMILARITIES| miRBase csi-MIR166e: 2.0E-14 PMRD cpt-miR166: 2.0E-14 microPC miR166: 8.0E-45 | UniProt no hits RFAM 6mir-166: 2.0E-12 | most similar mature miRNAs |
Identical with: miR166 from microPC (MNEST046481) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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