ABOUT THIS RECORDspecies: Cucumis melo subsp. melo
miRNA family: MIR167
source: miRNEST
Taxonomy by NCBI:
Cucumis melo subsp. melo Cucumis melo Cucumis Cucurbitaceae Cucurbitales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTA miRNA* GATCATATGGTAGCTTCACC mismatches: 2 bulges: 1 |
pre-miRNA
TTGAATCACCAGCAGTTGAAGCTGCCAGCATGATCTAAACTTCTTCTTGCTCTTCACTCAAGCCAAGGAAAGATCAGATCATATGGTAGCTTCACCTTTTG
ATGGTAT
dot-bracket secondary structure
)...((((.(((.((.(((((((((((..(((((((...(((.((((((((.........)).)))))))))...))))))).))))))))))).)).)))
.))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TTGAATCACCAGCAGTTGAAGCTGCCAGCATGATCTAAACTTCTTCTTGCTCTTCACTCAAGCCAAGGAAAGATCAGATCATATGGTAGCTTCACCTTTTG
ATGGTAT
dot-bracket secondary structure
)...((((.(((.((.(((((((((((..(((((((...(((.((((((((.........)).)))))))))...))))))).))))))))))).)).)))
.))))..
SIMILARITIES| miRBase tcc-MIR167a: 6.0E-12 PMRD sly-miR167: 2.0E-11 microPC miR167: 8.0E-39 | UniProt no hits RFAM 1MIR167_1: 1.0E-10 | most similar mature miRNAs |
Identical with: miR167 from microPC (MNEST046078) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
