ABOUT THIS RECORDspecies: Cucumis melo subsp. melo
miRNA family: MIR167
source: miRNEST
Taxonomy by NCBI:
Cucumis melo subsp. melo Cucumis melo Cucumis Cucurbitaceae Cucurbitales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTA miRNA* GATCATATGGTAGCTTCACC mismatches: 2 bulges: 1 |
pre-miRNA
TGAATCACCAGCAGTTGAAGCTGCCAGCATGATCTAAACTTCTTCTTGCTCTTCACTCAAGCCAAGGAAAGATCAGATCATATGGTAGCTTCACCTTTTG
ATGGTAT
dot-bracket secondary structure
...((((.(((.((.(((((((((((..(((((((...(((.((((((((.........)).)))))))))...))))))).))))))))))).)).)))
.))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGAATCACCAGCAGTTGAAGCTGCCAGCATGATCTAAACTTCTTCTTGCTCTTCACTCAAGCCAAGGAAAGATCAGATCATATGGTAGCTTCACCTTTTG
ATGGTAT
dot-bracket secondary structure
...((((.(((.((.(((((((((((..(((((((...(((.((((((((.........)).)))))))))...))))))).))))))))))).)).)))
.))))..
SIMILARITIES| miRBase tcc-MIR167a: 0.000000000006 PMRD sly-miR167: 0.00000000002 microPC miR167: 8e-39 | UniProt no hits RFAM MIR167_1: 0.0000000001 | most similar mature miRNAs |
Identical with: miR167 from microPC (MNEST046078) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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