ABOUT THIS RECORDspecies: Cucumis melo subsp. melo
miRNA family: MIR167
source: miRNEST
Taxonomy by NCBI:
Cucumis melo subsp. melo Cucumis melo Cucumis Cucurbitaceae Cucurbitales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTG miRNA* GGTCATCTTACAGCTTCAAT mismatches: 2 bulges: 1 |
pre-miRNA
TGTCTGTAAACGATGTGTTGGTTTGAGAGGTTGAAGCTGCCAGCATGATCTGAGGAACGCTAAAACATTTTGTTAAAGATTGGTTTCTTCCATCAGGTCA
TCTTACAGCTTCAATCATTCAATCACCAACACTATTGGTATCT
dot-bracket secondary structure
.....(((..(((((((((((((((((.(((((((((((..((.(((((((((((((.(((((((((...)))).....)))))...)))).))))))))
)))..))))))))))).)))))..)))))))).)))).)))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGTCTGTAAACGATGTGTTGGTTTGAGAGGTTGAAGCTGCCAGCATGATCTGAGGAACGCTAAAACATTTTGTTAAAGATTGGTTTCTTCCATCAGGTCA
TCTTACAGCTTCAATCATTCAATCACCAACACTATTGGTATCT
dot-bracket secondary structure
.....(((..(((((((((((((((((.(((((((((((..((.(((((((((((((.(((((((((...)))).....)))))...)))).))))))))
)))..))))))))))).)))))..)))))))).)))).)))..
SIMILARITIES| miRBase bdi-MIR167d: 0.0000000001 PMRD gma-miR167o: 0.00000000000003 microPC miR167: 4e-41 | UniProt no hits RFAM MIR167_1: 0.00000000003 | most similar mature miRNAs |
Identical with: miR167 from microPC (MNEST045846) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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