ABOUT THIS RECORDspecies: Cucumis melo subsp. melo
miRNA family: miR319b
source: miRNEST
Taxonomy by NCBI:
Cucumis melo subsp. melo Cucumis melo Cucumis Cucurbitaceae Cucurbitales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAGCTTTCTTCAGTCCACTC miRNA* TTGGACTGAAGGGAGCTCCCT mismatches: 4 bulges: 0 |
pre-miRNA
TAAGAGAGCTTTCTTCAGTCCACTCATGGGTGGCGGTAGGGTTTAATTAGCTGCCGACTCATTCATTCAAATATTGAGTCCAAAAATTTCAAATCTCAAA
TGGATTCACTAAACGATTGAATGATGCGGGAGACAAATTGAATCTTAAGCTTCCTGTACTTGGACTGAAGGGAGCTCCCTT
dot-bracket secondary structure
.(((.(((((((((((((((((...(((((.(((..((((((((((((..((.(((..(((((((.((...((.((((((((..................
)))))))).))...)).)))))))..))).))...)))))))))))).))).)))))...))))))))))))))))).)))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TAAGAGAGCTTTCTTCAGTCCACTCATGGGTGGCGGTAGGGTTTAATTAGCTGCCGACTCATTCATTCAAATATTGAGTCCAAAAATTTCAAATCTCAAA
TGGATTCACTAAACGATTGAATGATGCGGGAGACAAATTGAATCTTAAGCTTCCTGTACTTGGACTGAAGGGAGCTCCCTT
dot-bracket secondary structure
.(((.(((((((((((((((((...(((((.(((..((((((((((((..((.(((..(((((((.((...((.((((((((..................
)))))))).))...)).)))))))..))).))...)))))))))))).))).)))))...))))))))))))))))).)))
SIMILARITIES| miRBase ptc-MIR319a: 2e-34 PMRD ptc-miR319a: 2e-34 microPC miR319: 5e-97 | UniProt no hits RFAM MIR159: 4e-33 | most similar mature miRNAs |
Identical with: miR319 from microPC (MNEST045333) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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