ABOUT THIS RECORDspecies: Cucumis melo subsp. melo
miRNA family: miR157d
source: miRNEST
Taxonomy by NCBI:
Cucumis melo subsp. melo Cucumis melo Cucumis Cucurbitaceae Cucurbitales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTCTCTATGCTTCTGTCATC miRNA* TGACAGAAGATAGAGAGCAC mismatches: 2 bulges: 1 |
pre-miRNA
TATGTGATATATGTTGTTGACAGAAGATAGAGAGCACAGATGATGATATGCAAAAATTTCATCAATCATTATTATTAATATCATTCTTTGTTTTTTAGGG
TTTAGAACTTTAGAGAGAGACATTATTATCCTTATCACTATGCATTTCACTCCATTTGTGCTCTCTATGCTTCTGTCATCACTCTCTTCACCCC
dot-bracket secondary structure
...((((.....((...(((((((((((((((((((((((((.(((.(((((.................((....((((.((.(((((((..(((((...
..)))))...))))))).)).)))).))............))))).)))...)))))))))))))))).)))))))))..)).....))))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TATGTGATATATGTTGTTGACAGAAGATAGAGAGCACAGATGATGATATGCAAAAATTTCATCAATCATTATTATTAATATCATTCTTTGTTTTTTAGGG
TTTAGAACTTTAGAGAGAGACATTATTATCCTTATCACTATGCATTTCACTCCATTTGTGCTCTCTATGCTTCTGTCATCACTCTCTTCACCCC
dot-bracket secondary structure
...((((.....((...(((((((((((((((((((((((((.(((.(((((.................((....((((.((.(((((((..(((((...
..)))))...))))))).)).)))).))............))))).)))...)))))))))))))))).)))))))))..)).....))))...
SIMILARITIES| miRBase ptc-MIR156j: 1e-17 PMRD ptc-miR156j: 1e-17 microPC miR157: 1e-88 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: miR156 from microPC (MNEST045352) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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