ABOUT THIS RECORDspecies: Cucumis melo subsp. melo
miRNA family: miR171i
source: miRNEST
Taxonomy by NCBI:
Cucumis melo subsp. melo Cucumis melo Cucumis Cucurbitaceae Cucurbitales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTTGGAACGGTTCAATCAAA miRNA* TGATTGAGCCGTGCCAATATC mismatches: 1 bulges: 0 |
pre-miRNA
CTTTGTAATTTTCGTATCGTGTCTGATGTTGGAACGGTTCAATCAAATCAAATCTCCTATGAATTGGGTCTTTTAATTTGATTGAGCCGTGCCAATATCGA
CGATTGACGTAAACTTTTC
dot-bracket secondary structure
).......(((.(((....((((.((((((((.(((((((((((((((.(((...((((.....))))...))).))))))))))))))).))))))))))
))....))).)))......
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTTTGTAATTTTCGTATCGTGTCTGATGTTGGAACGGTTCAATCAAATCAAATCTCCTATGAATTGGGTCTTTTAATTTGATTGAGCCGTGCCAATATCGA
CGATTGACGTAAACTTTTC
dot-bracket secondary structure
).......(((.(((....((((.((((((((.(((((((((((((((.(((...((((.....))))...))).))))))))))))))).))))))))))
))....))).)))......
SIMILARITIES| miRBase rco-MIR171e: 1.0E-13 PMRD vvi-miR171i: 2.0E-12 microPC miR171: 5.0E-37 | UniProt no hits RFAM 1MIR171_1: 2.0E-12 | most similar mature miRNAs |
Identical with: miR171 from microPC (MNEST045880) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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