miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST000497
species: Cucumis melo subsp. melo
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Cucumis melo subsp. melo Cucumis melo Cucumis Cucurbitaceae Cucurbitales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCATCTTCATCATCATCATAG

miRNA*
 GTTCAGGTTTATGGAGATGATG

mismatches: 4
bulges: 1
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pre-miRNA
 TCATCATCATCATCATCATCATCATCTTCATCATCATCATAGTGAAGTAAAATAGATGACCGTCGCTGAAAGGTTGTTTTGATTCAATCAAACAATTTCA
TTCAACTCATTTTCTCCAACTCTCTGAAACATTCATTGCATTCATTGCCGCAATCAAGTTTCAGGTGGGAAAATCGGTCGTAGATTTAGGGTTAGGTTGA
TTGTTTTTGTTCTCAAATTCTCAAAGAAGAGGAGGAAGAGGAAGAGGAAGACTAGGTTTACGGGTTAGGGTTTTGGTTTTGCGTTTTTCTTGAAAAATGA
CTGACGTGATACTGCATATATACGACGTTACGAATAGCGGATCAGATAAGACCAATAATACAATTGTTAATATCAACAAGATCTTCAAGGATGGAAATGG
TCTAGGCGGTATCTTCCATAGCGCTGTTCAGGTTTATGGAGATGATGAATGGTCCTTCGGGTTTT

dot-bracket secondary structure
...........(((((..(((((((((((((.(((...((((((.........((((.((((((..(((((((((((((.(((...))))))))))))..
))))(((.((((((.(((....((((((((.((.(((((..........))))).))))))))))))))))))).)))(((((((((((..((.......
((.(((((.(((((...((((...))))...))))).))))).)).))...))))))))))).((((.((((((((((...(((((((....))))))).
..))).((((.((((...(((.((......)).)))))))))))..)))))))..))))....(((((......))))).((((....))))(((.....
))).)))))))))).......))))))...)))..))))))))))))))))))((....))....


SIMILARITIES
miRBase mtr-MIR2673a: 0.0004

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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