miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST000498
species: Cucumis melo subsp. melo
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Cucumis melo subsp. melo Cucumis melo Cucumis Cucurbitaceae Cucurbitales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCATCATCATCATCATCTTCA

miRNA*
 GAGATGATGAATGGTCCTT

mismatches: 2
bulges: 2
View larger
pre-miRNA
 CATCATCATCATCATCATCATCATCATCTTCATCATCATCATAGTGAAGTAAAATAGATGACCGTCGCTGAAAGGTTGTTTTGATTCAATCAAACAATTT
CATTCAACTCATTTTCTCCAACTCTCTGAAACATTCATTGCATTCATTGCCGCAATCAAGTTTCAGGTGGGAAAATCGGTCGTAGATTTAGGGTTAGGTT
GATTGTTTTTGTTCTCAAATTCTCAAAGAAGAGGAGGAAGAGGAAGAGGAAGACTAGGTTTACGGGTTAGGGTTTTGGTTTTGCGTTTTTCTTGAAAAAT
GACTGACGTGATACTGCATATATACGACGTTACGAATAGCGGATCAGATAAGACCAATAATACAATTGTTAATATCAACAAGATCTTCAAGGATGGAAAT
GGTCTAGGCGGTATCTTCCATAGCGCTGTTCAGGTTTATGGAGATGATGAATGGTCCTTCGGGTTTT

dot-bracket secondary structure
.............(((((..(((((((((((((.(((...((((((.........((((.((((((..(((((((((((((.(((...))))))))))))
..))))(((.((((((.(((....((((((((.((.(((((..........))))).))))))))))))))))))).)))(((((((((((..((.....
..((.(((((.(((((...((((...))))...))))).))))).)).))...))))))))))).((((.((((((((((...(((((((....))))))
)...))).((((.((((...(((.((......)).)))))))))))..)))))))..))))....(((((......))))).((((....))))(((...
..))).)))))))))).......))))))...)))..))))))))))))))))))((....))....


SIMILARITIES
miRBase mtr-MIR2673a: 0.0004

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record




Liczniki na strone;