ABOUT THIS RECORDspecies: Cycas rumphii
miRNA family: miR166d
source: miRNEST
Taxonomy by NCBI:
Cycas rumphii Cycas Cycadaceae Cycadales Cycadopsida Cycadophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAATGTTGTCTGGCTCGACT miRNA* TCGGACCAGGCTTCATTCCCC mismatches: 4 bulges: 0 |
pre-miRNA
ATCAATGTTGAGGGGAATGTTGTCTGGCTCGACTCGATCCACAGACTTTTGGTTGGAGGGTGCTGTCGGACCAGGCTTCATTCCCCCCAATTTGA
dot-bracket secondary structure
)((((.((((.((((((((..((((((.(((((.((.((((...(((...)))))))...))..))))).))))))..)))))))).))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATCAATGTTGAGGGGAATGTTGTCTGGCTCGACTCGATCCACAGACTTTTGGTTGGAGGGTGCTGTCGGACCAGGCTTCATTCCCCCCAATTTGA
dot-bracket secondary structure
)((((.((((.((((((((..((((((.(((((.((.((((...(((...)))))))...))..))))).))))))..)))))))).))))))))
SIMILARITIES| miRBase vvi-MIR166e: 1.0E-9 PMRD vvi-miR166e: 1.0E-9 microPC miR166: 4.0E-37 | UniProt no hits RFAM 6mir-166: 8.0E-8 | most similar mature miRNAs |
Identical with: miR166 from microPC (MNEST045008) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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