ABOUT THIS RECORDspecies: Cycas rumphii
miRNA family: MIR167
source: miRNEST
Taxonomy by NCBI:
Cycas rumphii Cycas Cycadaceae Cycadales Cycadopsida Cycadophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGATCATGTGGCAGTCTCAGC miRNA* TGAAGCTGCCAGCATGATCTGG mismatches: 1 bulges: 1 |
pre-miRNA
TTTCGTGTTCGTGGGAGAGGCTGAAGCTGCCAGCATGATCTGGTTAATATTGCTCTCGCCAGTTGCTTTTGGGTACCAGATCATGTGGCAGTCTCAGCAAC
TCCCTTGCAGACAT
dot-bracket secondary structure
)...(((((.(((((((..(((((.(((((((.(((((((((((...((..((.((....))..))...))...)))))))))))))))))).)))))..)
))))..)).)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTTCGTGTTCGTGGGAGAGGCTGAAGCTGCCAGCATGATCTGGTTAATATTGCTCTCGCCAGTTGCTTTTGGGTACCAGATCATGTGGCAGTCTCAGCAAC
TCCCTTGCAGACAT
dot-bracket secondary structure
)...(((((.(((((((..(((((.(((((((.(((((((((((...((..((.((....))..))...))...)))))))))))))))))).)))))..)
))))..)).)))))
SIMILARITIES| miRBase osa-MIR167i: 4.0E-10 PMRD osa-miR167i: 4.0E-10 microPC miR167: 5.0E-37 | UniProt no hits RFAM 1MIR167_1: 7.0E-9 | most similar mature miRNAs |
Identical with: miR167 from microPC (MNEST046777) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
