ABOUT THIS RECORDspecies: Cycas rumphii
miRNA family: MIR838
source: miRNEST
Taxonomy by NCBI:
Cycas rumphii Cycas Cycadaceae Cycadales Cycadopsida Cycadophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTTCTTCTTCTTCTTACATT miRNA* TGGTAGTGGAGAGTGAAACGT mismatches: 4 bulges: 2 |
pre-miRNA
TCCGACATTGGATATGCATAAAGTGGTAGTGGAGAGTGAAACGTTTTCCGGTTGGCTTTTTCCTGTGAGTTTATGGGAATTTGTGAGAGATTTTACCGGC
ACAAACACGAGAAATCTTGATGCTGCTCTTAGTACAAGTTGCTTGGATCTAATGACATCTTGAAACTTCCTCAAGATACCGTAGAGCAATAGCTTATTGG
ATACAATATTTCTTCTTCTTCTTACATTGATTTAGCATCTATCGCCTA
dot-bracket secondary structure
((((....)))).((((.((((...((((.((((((.((((.(((.((((((.((((..((((((((....)))))))).(((((.((((......((((
(....((.((....)).)).))))).))))..)))))(((((((.......(((..(((((((.......)))))))..))).))))))))))).)))))
)...))).))))...)))))))))).....))))))))..........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TCCGACATTGGATATGCATAAAGTGGTAGTGGAGAGTGAAACGTTTTCCGGTTGGCTTTTTCCTGTGAGTTTATGGGAATTTGTGAGAGATTTTACCGGC
ACAAACACGAGAAATCTTGATGCTGCTCTTAGTACAAGTTGCTTGGATCTAATGACATCTTGAAACTTCCTCAAGATACCGTAGAGCAATAGCTTATTGG
ATACAATATTTCTTCTTCTTCTTACATTGATTTAGCATCTATCGCCTA
dot-bracket secondary structure
((((....)))).((((.((((...((((.((((((.((((.(((.((((((.((((..((((((((....)))))))).(((((.((((......((((
(....((.((....)).)).))))).))))..)))))(((((((.......(((..(((((((.......)))))))..))).))))))))))).)))))
)...))).))))...)))))))))).....))))))))..........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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