ABOUT THIS RECORDspecies: Cynara scolymus
miRNA family: MIR398
source: miRNEST
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCGCCCCTG miRNA* GGTGTGACATGAGAACACATA mismatches: 2 bulges: 0 |
pre-miRNA
CATACTGATAATATTGGTAGAGATACCCAACAGGTGTGACATGAGAACACATATATAAGATGCAACAACATGTAGTACTTGGTATTTTATTATGTGTTCT
CAGGTCGCCCCTGCAGGGTTTTCTTCTGCTCAAACACATCAC
dot-bracket secondary structure
.....((((....((((((((((.((((..((((.(((((.((((((((((((.(((((((((....((.....)).....)))))))))))))))))))
)).))))).))))..))))..)).))))).)))....)))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CATACTGATAATATTGGTAGAGATACCCAACAGGTGTGACATGAGAACACATATATAAGATGCAACAACATGTAGTACTTGGTATTTTATTATGTGTTCT
CAGGTCGCCCCTGCAGGGTTTTCTTCTGCTCAAACACATCAC
dot-bracket secondary structure
.....((((....((((((((((.((((..((((.(((((.((((((((((((.(((((((((....((.....)).....)))))))))))))))))))
)).))))).))))..))))..)).))))).)))....)))).
SIMILARITIES| miRBase tcc-MIR398a: 0.000000007 PMRD vvi-miR398c: 0.000007 microPC miR398: 0.000007 | UniProt no hits RFAM MIR398: 0.00003 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
