ABOUT THIS RECORDspecies: Cynodon dactylon
miRNA family: MIR156
source: miRNEST
Taxonomy by NCBI:
Cynodon dactylon Cynodon Eleusininae Cynodonteae Chloridoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCACA miRNA* TGCTCGCTCCTCTTTCTGTCAGC mismatches: 2 bulges: 2 |
pre-miRNA
CCTTATACGGCCCTGGAGAGATTGACAGAAGAGAGTGAGCACACGGGGCGGCGGTCGGCACTGGACGTGTGTCGTCCCCGCCGCGTGCTCGCTCCTCTTTC
TGTCAGCCTCTCTCTTGTCCAAGGC
dot-bracket secondary structure
).......(((...(((((((((((((((((.((((((((((.....(((((((.((((((.......))))))...)))))))))))))))))...))))
))))))..))))))).)))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCTTATACGGCCCTGGAGAGATTGACAGAAGAGAGTGAGCACACGGGGCGGCGGTCGGCACTGGACGTGTGTCGTCCCCGCCGCGTGCTCGCTCCTCTTTC
TGTCAGCCTCTCTCTTGTCCAAGGC
dot-bracket secondary structure
).......(((...(((((((((((((((((.((((((((((.....(((((((.((((((.......))))))...)))))))))))))))))...))))
))))))..))))))).)))......
SIMILARITIES| miRBase sbi-MIR156e: 8.0E-27 PMRD sbi-miR156e: 8.0E-27 microPC miR156: 6.0E-9 | UniProt no hits RFAM 6mir-156: 3.0E-14 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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