ABOUT THIS RECORDspecies: Cynodon dactylon
miRNA family: MIR159
source: miRNEST
Taxonomy by NCBI:
Cynodon dactylon Cynodon Eleusininae Cynodonteae Chloridoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGATTGAAGGGAGCTCCT miRNA* GAGCTCCCTTCGATCCAATCC mismatches: 3 bulges: 0 |
pre-miRNA
TATGATGAATCGAAGAGCTCCCTTCGATCCAATCCAGGAGGGGGAGTGGTCGGATGCAGCTGCCGGTTCATGGATACCTATCTGGTGCAGAAATGTTCCAT
GTTCACCTGCACTTGCATGGGTGTGCATGACCCGGGAGATGAACCCACCAGCATCTTCCCCTCGTGTTTGGATTGAAGGGAGCTCCTCTCTCTCTCT
dot-bracket secondary structure
)..........((.((((((((((((((((((..((.(((((((((((((.((...((.((.((((.(((((.((((((((..(((((((.(((((...))
)))...)))))))...)))))))).))))).)))).)).))..)).))))....))))))))).)).)))))))))))))))))).)).........
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TATGATGAATCGAAGAGCTCCCTTCGATCCAATCCAGGAGGGGGAGTGGTCGGATGCAGCTGCCGGTTCATGGATACCTATCTGGTGCAGAAATGTTCCAT
GTTCACCTGCACTTGCATGGGTGTGCATGACCCGGGAGATGAACCCACCAGCATCTTCCCCTCGTGTTTGGATTGAAGGGAGCTCCTCTCTCTCTCT
dot-bracket secondary structure
)..........((.((((((((((((((((((..((.(((((((((((((.((...((.((.((((.(((((.((((((((..(((((((.(((((...))
)))...)))))))...)))))))).))))).)))).)).))..)).))))....))))))))).)).)))))))))))))))))).)).........
SIMILARITIES| miRBase sof-MIR159c: 3.0E-67 PMRD sof-miR159c: 3.0E-67 microPC miR319: 8.0E-65 | UniProt no hits RFAM 9MIR159: 2.0E-63 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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