ABOUT THIS RECORDspecies: Cynodon dactylon
miRNA family: MIR160
source: miRNEST
Taxonomy by NCBI:
Cynodon dactylon Cynodon Eleusininae Cynodonteae Chloridoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCCA miRNA* GCGTGCGAGGGGCCAAGCATG mismatches: 2 bulges: 0 |
pre-miRNA
CGCAGGAGAAAGAGGTGAAAACGAAGGGAATATGCCTGGCTCCCTGTATGCCACTCGCACGGCTGCCAACCGGATCGGAGAGCTTCATCGATCGGCGGCCG
CTGCGGCTGGCGTGCGAGGGGCCAAGCATGGCCCTCTCTCTCTCTCTCTCTCTCTCTC
dot-bracket secondary structure
)...(((((.(((((.((....((((((..(((((.(((((((.(((((((((.(((((((((((((.....((((((.((...)).))))))))))))))
.))))).))))))))).))))))).))))).)))).))....))..))))).))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CGCAGGAGAAAGAGGTGAAAACGAAGGGAATATGCCTGGCTCCCTGTATGCCACTCGCACGGCTGCCAACCGGATCGGAGAGCTTCATCGATCGGCGGCCG
CTGCGGCTGGCGTGCGAGGGGCCAAGCATGGCCCTCTCTCTCTCTCTCTCTCTCTCTC
dot-bracket secondary structure
)...(((((.(((((.((....((((((..(((((.(((((((.(((((((((.(((((((((((((.....((((((.((...)).))))))))))))))
.))))).))))))))).))))))).))))).)))).))....))..))))).))))).
SIMILARITIES| miRBase zma-MIR160e: 6.0E-16 PMRD zma-miR160e: 6.0E-16 microPC miR160: 2.0E-12 | UniProt no hits RFAM 0mir-160: 1.0E-11 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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