ABOUT THIS RECORDspecies: Dioscorea alata
miRNA family: MIR156
source: miRNEST
Taxonomy by NCBI:
Dioscorea alata Dioscorea Dioscoreaceae Dioscoreales Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGAGAGCATG miRNA* TGCTATTAACTAGTGTCGCA mismatches: 5 bulges: 1 |
pre-miRNA
CAAAGTATCATTAGCAGCAGGCATGCTATTAACTAGTGTCGCAGGGCAACCCAAATATGTTTTTATACATATGTTTCTAGAGAACATAAGCCACAGGATGA
CAGAAGAGAGAGAGCATGCTATGTAGCTTATCTGATC
dot-bracket secondary structure
).....((((..(((.(((((((((((.((..((..(((((...(((........(((((((((...............))))))))).)))......)))
))..))..))..)))))))).))).)))....)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CAAAGTATCATTAGCAGCAGGCATGCTATTAACTAGTGTCGCAGGGCAACCCAAATATGTTTTTATACATATGTTTCTAGAGAACATAAGCCACAGGATGA
CAGAAGAGAGAGAGCATGCTATGTAGCTTATCTGATC
dot-bracket secondary structure
).....((((..(((.(((((((((((.((..((..(((((...(((........(((((((((...............))))))))).)))......)))
))..))..))..)))))))).))).)))....)))).
SIMILARITIES| miRBase vvi-MIR156h: 2.0E-6 PMRD vvi-miR156h: 2.0E-6 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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