ABOUT THIS RECORDspecies: Elaeis guineensis
miRNA family: MIR528
source: miRNEST
Taxonomy by NCBI:
Elaeis guineensis Elaeis Elaeidinae Cocoseae Arecoideae Arecaceae Arecales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAAGGGGCATGCAGAGGAG miRNA* TACCTGCTGCAGGGCTCATTTCACT mismatches: 3 bulges: 2 |
pre-miRNA
TGGTAACCATCACTGAAATTTATACCTGCTGCAGGGCTCATTTCACTCACTAGTCGCTTCATGTACCATGTTTTTGTATAGCTTTCTGGAACAACTAAAT
GGACAGAGAGAGGTTGATTGATTCAATCGGGAAGTAGCAGTAGCGGTGGAAGGGGCATGCAGAGGAGAGGTCAAGATGGAGAGAAA
dot-bracket secondary structure
......(((((..(((..(((...(((.(((((..((((.(((((((.(((.((.(((((.(((((.........))))).(((((((...((......)
)..))))))).((((((.....))))))..))))).)))))...))))))).)))).)))))))).))).))).))))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TGGTAACCATCACTGAAATTTATACCTGCTGCAGGGCTCATTTCACTCACTAGTCGCTTCATGTACCATGTTTTTGTATAGCTTTCTGGAACAACTAAAT
GGACAGAGAGAGGTTGATTGATTCAATCGGGAAGTAGCAGTAGCGGTGGAAGGGGCATGCAGAGGAGAGGTCAAGATGGAGAGAAA
dot-bracket secondary structure
......(((((..(((..(((...(((.(((((..((((.(((((((.(((.((.(((((.(((((.........))))).(((((((...((......)
)..))))))).((((((.....))))))..))))).)))))...))))))).)))).)))))))).))).))).))))).......
SIMILARITIES| miRBase bdi-MIR528: 0.00000001 PMRD osa-miR528: 0.00004 microPC miR528: 0.000000000003 | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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