ABOUT THIS RECORDspecies: Elaeis guineensis
miRNA family: MIR398
source: miRNEST
Taxonomy by NCBI:
Elaeis guineensis Elaeis Elaeidinae Cocoseae Arecoideae Arecaceae Arecales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCGCCCCTG miRNA* GGGGCGACCTGCGACCACACG mismatches: 2 bulges: 0 |
pre-miRNA
TTCCAACAGGGGCGACCTGCGACCACACGAGCTGAAGTCCTTCATCGAAATCTCGTCCCTCGATTGCTGCAATCGGACGGTGCCCGTGTGTTCTCAGGTCG
CCCCTGCCGGGCCTT
dot-bracket secondary structure
)(((..(((((((((((((.((.((((((.((.((..((.......))..))((((((...(((((...))))))))))).)).)))))).)).)))))))
))))))..)))....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTCCAACAGGGGCGACCTGCGACCACACGAGCTGAAGTCCTTCATCGAAATCTCGTCCCTCGATTGCTGCAATCGGACGGTGCCCGTGTGTTCTCAGGTCG
CCCCTGCCGGGCCTT
dot-bracket secondary structure
)(((..(((((((((((((.((.((((((.((.((..((.......))..))((((((...(((((...))))))))))).)).)))))).)).)))))))
))))))..)))....
SIMILARITIES| miRBase osa-MIR398b: 6.0E-9 PMRD osa-miR398b: 6.0E-9 microPC miR398: 2.0E-52 | UniProt no hits RFAM 8MIR398: 1.0E-7 | most similar mature miRNAs |
Identical with: miR398 from microPC (MNEST046795) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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