ABOUT THIS RECORDspecies: Elaeis guineensis
miRNA family: miR160d
source: miRNEST
Taxonomy by NCBI:
Elaeis guineensis Elaeis Elaeidinae Cocoseae Arecoideae Arecaceae Arecales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCGTGCGAGGAGCCAAGCATA miRNA* TGCCTGGCTCCCTGTATGCCA mismatches: 2 bulges: 0 |
pre-miRNA
TGTGAGATGAGTTGTGCCTGGCTCCCTGTATGCCACTGGCTTAGAAACTAATCTATCAATAGATTAGCTACGGCGGGTGGCGTGCGAGGAGCCAAGCATAC
TCTCGCTCT
dot-bracket secondary structure
)..(((..((((.((((.(((((((.(((((((((((.((((((...((((((((....))))))))))).))).))))))))))).))))))).))))))
))...))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGTGAGATGAGTTGTGCCTGGCTCCCTGTATGCCACTGGCTTAGAAACTAATCTATCAATAGATTAGCTACGGCGGGTGGCGTGCGAGGAGCCAAGCATAC
TCTCGCTCT
dot-bracket secondary structure
)..(((..((((.((((.(((((((.(((((((((((.((((((...((((((((....))))))))))).))).))))))))))).))))))).))))))
))...))).
SIMILARITIES| miRBase ptc-MIR160d: 4.0E-10 PMRD oba-miR160: 3.0E-41 microPC miR160: 2.0E-42 | UniProt no hits RFAM 0mir-160: 6.0E-40 | most similar mature miRNAs |
Identical with: miR160 from microPC (MNEST045369) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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