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ABOUT THIS RECORD

ID: MNEST000559
species: Elaeis guineensis
miRNA family: miR160d
source: miRNEST

Taxonomy by NCBI:
Elaeis guineensis Elaeis Elaeidinae Cocoseae Arecoideae Arecaceae Arecales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GCGTGCGAGGAGCCAAGCATA

miRNA*
 TGCCTGGCTCCCTGTATGCCA

mismatches: 2
bulges: 0
View larger
pre-miRNA
 GTGAGATGAGTTGTGCCTGGCTCCCTGTATGCCACTGGCTTAGAAACTAATCTATCAATAGATTAGCTACGGCGGGTGGCGTGCGAGGAGCCAAGCATAC
TCTCGCTCT

dot-bracket secondary structure
..(((..((((.((((.(((((((.(((((((((((.((((((...((((((((....))))))))))).))).))))))))))).))))))).))))))
))...))).


SIMILARITIES
miRBase ptc-MIR160d: 0.0000000004

PMRD oba-miR160: 3e-41

microPC miR160: 2e-42		UniProt no hits

RFAM mir-160: 6e-40		most similar mature miRNAs

Identical with: miR160 from microPC (MNEST045369)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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