ABOUT THIS RECORDspecies: Eschscholzia californica
miRNA family: MIR1446
source: miRNEST
Taxonomy by NCBI:
Eschscholzia californica Eschscholzia Eschscholzioideae Papaveraceae Ranunculales stem eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATCTGATCTCTCTCCCTCAAA miRNA* TCAGTGATAGATCGGGGAT mismatches: 4 bulges: 2 |
pre-miRNA
GAAATTTTCAGTGATAGATCGGGGATATGAACTTTGAAATTCATCAATTGTCGATCTGATTGTTTCTCTAATCGATTATTTGATAAGTTTTTCGGCGGAT
TTTGAGGAGTTTTATCAAAACCAGATTCTGAATCTGATCTCTCTCCCTCAAAAGAAAAAAA
dot-bracket secondary structure
....((((.((.((.((((((((.....(((((..((((((.(((((..((((((..((.......))..))))))...))))).))))))..)).((.(
(((((.........))))))))...)))....)))))))).))...)).))))........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GAAATTTTCAGTGATAGATCGGGGATATGAACTTTGAAATTCATCAATTGTCGATCTGATTGTTTCTCTAATCGATTATTTGATAAGTTTTTCGGCGGAT
TTTGAGGAGTTTTATCAAAACCAGATTCTGAATCTGATCTCTCTCCCTCAAAAGAAAAAAA
dot-bracket secondary structure
....((((.((.((.((((((((.....(((((..((((((.(((((..((((((..((.......))..))))))...))))).))))))..)).((.(
(((((.........))))))))...)))....)))))))).))...)).))))........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
