ABOUT THIS RECORDspecies: Eucalyptus globulus
miRNA family: MIR167
source: miRNEST
Taxonomy by NCBI:
Eucalyptus globulus Eucalyptus Myrtaceae Myrtales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCGTGATCTC miRNA* GATCATGTGGCAGCTTCACC mismatches: 1 bulges: 1 |
pre-miRNA
TCATCGCGCACCACTATCAGATGAAGCTGCCAGCGTGATCTCAACTTTTCTGGTCTCTTAAAGGAAAGATCAGATCATGTGGCAGCTTCACCTGTTGCTG
GGAGCTCGAG
dot-bracket secondary structure
...(((.((.(((.((.(((.(((((((((((.((((((((...(((((((..........)))))))...))))))))))))))))))).))).)).))
)..)).))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCATCGCGCACCACTATCAGATGAAGCTGCCAGCGTGATCTCAACTTTTCTGGTCTCTTAAAGGAAAGATCAGATCATGTGGCAGCTTCACCTGTTGCTG
GGAGCTCGAG
dot-bracket secondary structure
...(((.((.(((.((.(((.(((((((((((.((((((((...(((((((..........)))))))...))))))))))))))))))).))).)).))
)..)).))).
SIMILARITIES| miRBase csi-MIR167b: 0.000000000001 PMRD vvi-miR167c: 0.0000000004 microPC miR167: 2e-33 | UniProt no hits RFAM MIR167_1: 0.0000000001 | most similar mature miRNAs |
Identical with: miR167 from microPC (MNEST045268) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
