ABOUT THIS RECORDspecies: Euphorbia esula
miRNA family: MIR159
source: miRNEST
Taxonomy by NCBI:
Euphorbia esula Euphorbia Euphorbieae Euphorbioideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGATTGAAGGGAGCTCTA miRNA* GAGCTCCTTGAAGTCCAAAAG mismatches: 2 bulges: 0 |
pre-miRNA
TAACCCCATGGAAAGGGTAGGGTGGAGCTCCTTGAAGTCCAAAAGAGGATTTTGCAGGGTAAATCAAGCTGCTGATCTATGGATTCCACAGTCCTAACCCT
AATTAATTATGGGGATAGGCTTGCGGCTTGCATATGTTAGGAGCTTTATTACCTCTTTGTTTTATCTTTCTTTGGATTGAAGGGAGCTCTACACTTTTCT
CTCTCTAGATT
dot-bracket secondary structure
).......((((.((((.(((((((((((((((..((((((((.((((((...(((((((((...(((((.(((((.((((....((.(((.((((.((((
(........))))).)))).))).))....)))).))))).)))))..))))))...)))...)))))).))))))))..)))))))))))).)))..))
)).))))....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TAACCCCATGGAAAGGGTAGGGTGGAGCTCCTTGAAGTCCAAAAGAGGATTTTGCAGGGTAAATCAAGCTGCTGATCTATGGATTCCACAGTCCTAACCCT
AATTAATTATGGGGATAGGCTTGCGGCTTGCATATGTTAGGAGCTTTATTACCTCTTTGTTTTATCTTTCTTTGGATTGAAGGGAGCTCTACACTTTTCT
CTCTCTAGATT
dot-bracket secondary structure
).......((((.((((.(((((((((((((((..((((((((.((((((...(((((((((...(((((.(((((.((((....((.(((.((((.((((
(........))))).)))).))).))....)))).))))).)))))..))))))...)))...)))))).))))))))..)))))))))))).)))..))
)).))))....
SIMILARITIES| miRBase csi-MIR159: 8.0E-16 PMRD ptc-miR159b: 2.0E-13 microPC miR159: 2.0E-93 | UniProt no hits RFAM 9MIR159: 1.0E-14 | most similar mature miRNAs |
Identical with: miR159 from microPC (MNEST046007), miR319 from microPC , miR159 from microPC , miR319 from microPC , miR159 from microPC , miR319 from microPC , miR159 from microPC |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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