ABOUT THIS RECORDspecies: Euphorbia esula
miRNA family: MIR160
source: miRNEST
Taxonomy by NCBI:
Euphorbia esula Euphorbia Euphorbieae Euphorbioideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCTTGTATGCCA miRNA* GCATTCAAGGAGTCAGGCATG mismatches: 1 bulges: 0 |
pre-miRNA
ATGCTTTTTTCGGGTTATTGTGTGCCTGGCTCCTTGTATGCCACTTGCAAAGTTCATCAGTAATTTGGTGAAACTCAGTAGATGGCATTCAAGGAGTCAG
GCATGCTGCTATCTAATCTTAAAA
dot-bracket secondary structure
......((((.((((((..(((((((((((((((((.((((((.((((..((((((((((....)))))).))))..)))).)))))).)))))))))))
)))))).......)))))).))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATGCTTTTTTCGGGTTATTGTGTGCCTGGCTCCTTGTATGCCACTTGCAAAGTTCATCAGTAATTTGGTGAAACTCAGTAGATGGCATTCAAGGAGTCAG
GCATGCTGCTATCTAATCTTAAAA
dot-bracket secondary structure
......((((.((((((..(((((((((((((((((.((((((.((((..((((((((((....)))))).))))..)))).)))))).)))))))))))
)))))).......)))))).))))
SIMILARITIES| miRBase rco-MIR160a: 0.000000002 PMRD vvi-miR160d: 0.000006 microPC miR160: 1e-40 | UniProt no hits RFAM mir-160: 0.000007 | most similar mature miRNAs |
Identical with: miR160 from microPC (MNEST046776) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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