ABOUT THIS RECORDspecies: Fagus sylvatica
miRNA family: miR162
source: miRNEST
Taxonomy by NCBI:
Fagus sylvatica Fagus Fagaceae Fagales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAGGCAGCGGTTCATCGAT miRNA* CGATAAACCTCTGCATCCAGC mismatches: 3 bulges: 0 |
pre-miRNA
TTGGTTGGTGGGTATGATAGGGTGAAGTCACTGGAGGCAGCGGTTCATCGATCTCTTCCTGGGAAATTTGTTGTGACACTAACACAAACATGAATCGGTC
GATAAACCTCTGCATCCAGCGCTCACTTCTCTCTCTCTCTCTCTCTCT
dot-bracket secondary structure
......((.(((...((.((((.(((((..(((((.((((.((((.(((((((..(((.((.........(((((.......))))).)).)))..))))
))).)))).)))).))))).....)))))...)))).)).))).))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTGGTTGGTGGGTATGATAGGGTGAAGTCACTGGAGGCAGCGGTTCATCGATCTCTTCCTGGGAAATTTGTTGTGACACTAACACAAACATGAATCGGTC
GATAAACCTCTGCATCCAGCGCTCACTTCTCTCTCTCTCTCTCTCTCT
dot-bracket secondary structure
......((.(((...((.((((.(((((..(((((.((((.((((.(((((((..(((.((.........(((((.......))))).)).)))..))))
))).)))).)))).))))).....)))))...)))).)).))).))..
SIMILARITIES| miRBase ghr-MIR162a: 2e-31 PMRD ghr-miR162a: 2e-31 microPC miR162: 6e-28 | UniProt no hits RFAM MIR162_2: 4e-20 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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