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ABOUT THIS RECORD

ID: MNEST000660
species: Festuca arundinacea
miRNA family: MIR396
source: miRNEST

Taxonomy by NCBI:
Festuca arundinacea Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCCACAGGCTTTCTTGAACTG

miRNA*
 GTTCAAGAAAGTCCTTGGAAA

mismatches: 0
bulges: 2
View larger
pre-miRNA
 CGTGCAGATCGCGGCCATGCTCTCCACAGGCTTTCTTGAACTGTGAACTCGCGCGCGTGCGCCGCCGGCCTGCTACTTCTCGCTTCGATCTTGTCTGCCT
AGCTTGTTCATGGTTCAAGAAAGTCCTTGGAAAACATGCCCGCCTCTCTCCT

dot-bracket secondary structure
.....(((..((((.((((...((((.(((((((((((((((((((((..((..(((.(((....(((...((........)).)))....))).)))..
.))..)))))))))))))))))).)))))))...)))).)))).))).....


SIMILARITIES
miRBase far-MIR396: 7e-77

PMRD far-miR396: 4e-26

microPC miR396: 4e-57		UniProt no hits

RFAM MIR396: 0.00000000000004		most similar mature miRNAs

Identical with: miR396 from microPC (MNEST044798)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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