ABOUT THIS RECORDspecies: Festuca arundinacea
miRNA family: MIR2001
source: miRNEST
Taxonomy by NCBI:
Festuca arundinacea Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGCTCGCCGGAGTAGCGTGCA miRNA* CGCGCTGCTTCGTCGAGCGTG mismatches: 3 bulges: 0 |
pre-miRNA
CATCCCAGGGCCCATTACAGTGCGGTGGCTCCGCTCGCCGGAGTAGCGTGCAGCGGAGGACTCCCACGCGCTGCTTCGTCGAGCGTGGCCACCCGTTCTA
TATTCATGACGGCGG
dot-bracket secondary structure
.........((((((((.((.(((((((((.((((((.((((((((((((....(((....)))..)))))))))))).)))))).))))).)))).)).
))...)))..)))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CATCCCAGGGCCCATTACAGTGCGGTGGCTCCGCTCGCCGGAGTAGCGTGCAGCGGAGGACTCCCACGCGCTGCTTCGTCGAGCGTGGCCACCCGTTCTA
TATTCATGACGGCGG
dot-bracket secondary structure
.........((((((((.((.(((((((((.((((((.((((((((((((....(((....)))..)))))))))))).)))))).))))).)))).)).
))...)))..)))..
SIMILARITIES| miRBase no hits PMRD tae-miR2001: 0.0000000000004 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
