ABOUT THIS RECORDspecies: Festuca arundinacea
miRNA family: MIR1122
source: miRNEST
Taxonomy by NCBI:
Festuca arundinacea Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGATACATCCGTATCTAGA miRNA* TAGACGCAGATGTATCTAGA mismatches: 2 bulges: 0 |
pre-miRNA
AATTGTACTTCCTCCGTACTAAAATAAGTGTTTTAGTTTTGTCTAGACGCAGATGTATCTAGATCTATTTTAGTTGTAGATACATCCGTATCTAGAAAAA
GTTGAGACACTTATTTTAGAACGGAGGGAGTAGCAT
dot-bracket secondary structure
.....((((((((((((.((((((((((((((((((((((.((((((.((.((((((((((...(((...)))...)))))))))).)).)))))).)))
))))))))))))))))))).))))))))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AATTGTACTTCCTCCGTACTAAAATAAGTGTTTTAGTTTTGTCTAGACGCAGATGTATCTAGATCTATTTTAGTTGTAGATACATCCGTATCTAGAAAAA
GTTGAGACACTTATTTTAGAACGGAGGGAGTAGCAT
dot-bracket secondary structure
.....((((((((((((.((((((((((((((((((((((.((((((.((.((((((((((...(((...)))...)))))))))).)).)))))).)))
))))))))))))))))))).))))))))))))....
SIMILARITIES| miRBase far-MIR1122: 2e-40 PMRD tae-miR1128: 0.000000007 microPC miR1136: 0.000000002 | UniProt no hits RFAM MIR1122: 0.0000001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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