ABOUT THIS RECORDspecies: Festuca arundinacea
miRNA family: MIR2079
source: miRNEST
Taxonomy by NCBI:
Festuca arundinacea Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAGTAGATGTTGATGACGCA miRNA* TGTCATTGGCTGTCTTATCGGC mismatches: 5 bulges: 1 |
pre-miRNA
AGAGTGGTGCAAGAGTAGATGTTGATGACGCAAAGAATGACAGGGAGGAAAGTATAATCACCATTGAATCCACTGAGGCCACCGATGATGTCAAGTCTGC
AGCAGTGGAAGCTGTTCTGCTGCTTCAAGCAAAGATCAACGATGAAAATGAAGATAGAATGTATCTTCGCCTTCTTGTTCCGGGTAATGTCATTGGCTGT
CTTATCGGCAAGGGTGG
dot-bracket secondary structure
.......(((..((..((((((((((((((........((((((((((..(((....(((....))).(((((((..((.......(((.....))).))
..))))))).)))..(((..((((...)))).)))(((....)))...((((((((.....))))))))))))))))))........)))))))))).))
))..)).))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AGAGTGGTGCAAGAGTAGATGTTGATGACGCAAAGAATGACAGGGAGGAAAGTATAATCACCATTGAATCCACTGAGGCCACCGATGATGTCAAGTCTGC
AGCAGTGGAAGCTGTTCTGCTGCTTCAAGCAAAGATCAACGATGAAAATGAAGATAGAATGTATCTTCGCCTTCTTGTTCCGGGTAATGTCATTGGCTGT
CTTATCGGCAAGGGTGG
dot-bracket secondary structure
.......(((..((..((((((((((((((........((((((((((..(((....(((....))).(((((((..((.......(((.....))).))
..))))))).)))..(((..((((...)))).)))(((....)))...((((((((.....))))))))))))))))))........)))))))))).))
))..)).))).......
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|P58223|Y4837_ARATH: 0.0000001 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
