ABOUT THIS RECORDspecies: Festuca pratensis
miRNA family: miR160d
source: miRNEST
Taxonomy by NCBI:
Festuca pratensis Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCGTGCGAGGAGCCAAGCATG miRNA* TGCCTGGCTCCCTGTATGCCA mismatches: 2 bulges: 0 |
pre-miRNA
TACTTGGGATATGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAACTCGGTTCACCTCCCACCACCGTAGCGTTGGCTCTACCGCGGATGGCGTGCGA
GGAGCCAAGCATGACCATCT
dot-bracket secondary structure
)...(((..(((((.(((((((.(((((((((.((((((((..((((((.((((............))))....)))))).))).))))).))))))))).
))))))).))))).)))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TACTTGGGATATGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAACTCGGTTCACCTCCCACCACCGTAGCGTTGGCTCTACCGCGGATGGCGTGCGA
GGAGCCAAGCATGACCATCT
dot-bracket secondary structure
)...(((..(((((.(((((((.(((((((((.((((((((..((((((.((((............))))....)))))).))).))))).))))))))).
))))))).))))).)))...
SIMILARITIES| miRBase tae-MIR160: 8.0E-27 PMRD tae-miR160: 8.0E-27 microPC miR160: 1.0E-19 | UniProt no hits RFAM 0mir-160: 8.0E-15 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
