ABOUT THIS RECORDspecies: Festuca pratensis
miRNA family: MIR159
source: miRNEST
Taxonomy by NCBI:
Festuca pratensis Festuca Loliinae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGATTGAAGGGAGCTCTG miRNA* GAGCTCCTATCATTCCAATGA mismatches: 3 bulges: 0 |
pre-miRNA
TTTTTGTGTTTGGTTTTGAGGTGGAGCTCCTATCATTCCAATGAAAGGTCTTGCTAGAAGGGGTGGTACAGCTGCTCGTTCATGGTTCCCACTATCCTAC
CTCCGTTTGAAACCAGGGAGATAGGCCTGTGGCTTGCATGACCGAGGAGCTGCATCGTCCCCTCGCTGGCCGCTCTTTGGATTGAAGGGAGCTCTGCATC
TAGGCCTAGTTCATGT
dot-bracket secondary structure
.....(((...(((((.((.(((((((((((.(((.(((((.((..((((..((....(((((((((.(((((.((((.(((((....((((...((((.
((((............)))).))))...))))....))))).)))).))))).)))).))))).)).))))..)).))))).))).))))))))))).))
.))))).....)))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTTTTGTGTTTGGTTTTGAGGTGGAGCTCCTATCATTCCAATGAAAGGTCTTGCTAGAAGGGGTGGTACAGCTGCTCGTTCATGGTTCCCACTATCCTAC
CTCCGTTTGAAACCAGGGAGATAGGCCTGTGGCTTGCATGACCGAGGAGCTGCATCGTCCCCTCGCTGGCCGCTCTTTGGATTGAAGGGAGCTCTGCATC
TAGGCCTAGTTCATGT
dot-bracket secondary structure
.....(((...(((((.((.(((((((((((.(((.(((((.((..((((..((....(((((((((.(((((.((((.(((((....((((...((((.
((((............)))).))))...))))....))))).)))).))))).)))).))))).)).))))..)).))))).))).))))))))))).))
.))))).....)))..
SIMILARITIES| miRBase far-MIR159: 9e-102 PMRD sar-miR159: 5e-94 microPC miR319: 3e-89 | UniProt no hits RFAM MIR159: 1e-30 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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