ABOUT THIS RECORDspecies: Gossypium arboreum
miRNA family: MIR2947
source: miRNEST
Taxonomy by NCBI:
Gossypium arboreum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATACCGTGCCCATGACTGTAG miRNA* ACGTTATGGGCATGGTATGGA mismatches: 0 bulges: 1 |
pre-miRNA
ATAAGCTTGTTAAGCGAAGTTACGTTATGGGCATGGTATGGATTGCTGTTTTTGATGATTTGTTGCTTTCATTAACAGCAAATTATACCGTGCCCATGAC
TGTAGCATCACTCGGCAGCTCTA
dot-bracket secondary structure
...((((.(((.((.((.(((((((((((((((((((((((.((((((((..(((.............)))..)))))))).))))))))))))))))))
.))))).)).)).)))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATAAGCTTGTTAAGCGAAGTTACGTTATGGGCATGGTATGGATTGCTGTTTTTGATGATTTGTTGCTTTCATTAACAGCAAATTATACCGTGCCCATGAC
TGTAGCATCACTCGGCAGCTCTA
dot-bracket secondary structure
...((((.(((.((.((.(((((((((((((((((((((((.((((((((..(((.............)))..)))))))).))))))))))))))))))
.))))).)).)).)))))))...
SIMILARITIES| miRBase gar-MIR2947: 5e-62 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: gar-MIR2947 from miRBase (MNEST041040) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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