ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: miR2949a
source: miRNEST
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCAAATCCAGTCAAAAGTTA miRNA* ACTTTTGAACTGGATTTGCCGA mismatches: 1 bulges: 1 |
pre-miRNA
CTACTGTCTTAGTTTGCGTCTTGACTTTTGAACTGGATTTGCCGACTTGAACTGCGTTGTTGATGGTTTCCAAAACCCGAGCCTGCAAATCCAGTCAAAAG
TTAAAACCGGGCTGAGATTTAC
dot-bracket secondary structure
)....(((((((((((.((.(((((((((((.((((((((((((((.((.....))..))))..(((((.........))))).)))))))))))))))))
)))).)))))))))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTACTGTCTTAGTTTGCGTCTTGACTTTTGAACTGGATTTGCCGACTTGAACTGCGTTGTTGATGGTTTCCAAAACCCGAGCCTGCAAATCCAGTCAAAAG
TTAAAACCGGGCTGAGATTTAC
dot-bracket secondary structure
)....(((((((((((.((.(((((((((((.((((((((((((((.((.....))..))))..(((((.........))))).)))))))))))))))))
)))).)))))))))))))....
SIMILARITIES| miRBase ghr-MIR2949a: 3.0E-60 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: ghr-MIR2949a from miRBase (MNEST041071) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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