ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIRf1215
source: miRNEST
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTGGTCATTTTGTTTACAGG miRNA* TGTGAACATCTGGACCAAGGG mismatches: 5 bulges: 0 |
pre-miRNA
GTGTTCAGATCCCTGGTCATTTTGTTTACAGGACCAGGTTCTCTAGGACCTCAGGGAAGAGCTTCCTTTTACCGCAATGCCGGACTGATATTTTATATGT
GTCTGACCCTTGTGAACATCTGGACCAAGGGGATGAGGG
dot-bracket secondary structure
...((((..(((.(((((....((((((((((...((((((....)))))).((((((....)))))).....((...))(((((..((((...))))..
)))))...))))))))))....))))).)))..))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
GTGTTCAGATCCCTGGTCATTTTGTTTACAGGACCAGGTTCTCTAGGACCTCAGGGAAGAGCTTCCTTTTACCGCAATGCCGGACTGATATTTTATATGT
GTCTGACCCTTGTGAACATCTGGACCAAGGGGATGAGGG
dot-bracket secondary structure
...((((..(((.(((((....((((((((((...((((((....)))))).((((((....)))))).....((...))(((((..((((...))))..
)))))...))))))))))....))))).)))..))))..
SIMILARITIES| miRBase no hits PMRD ptc-miRf11908-akr: 2e-27 microPC no hits | UniProt sp|Q9LF38|EDL1_ARATH: 3e-17 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
