ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR2948
source: miRNEST
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGGGAGAGTTGGGCAAGAAT miRNA* TCTTACCAACCCCTCCCATACC mismatches: 2 bulges: 2 |
pre-miRNA
GCAGTAAGAGAAAGGGAGAGAGTGGTGTTGGGAGTTGGAGGTGTGGGAGAGTTGGGCAAGAATTATGACCTTTGTTCAATCCAAAGGGGCAATTCTTACC
AACCCCTCCCATACCCTTGATTTCCAACCGTTGCTCCCCTTCCCTGCCTTGGA
dot-bracket secondary structure
.......(((..((((((.(((((..((((((((((((.((((((((((.(((((..((((((..((.((((((.......))))))..)))))))).))
)))..)))))))))).))))))))))))...)))))...))))))..)))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCAGTAAGAGAAAGGGAGAGAGTGGTGTTGGGAGTTGGAGGTGTGGGAGAGTTGGGCAAGAATTATGACCTTTGTTCAATCCAAAGGGGCAATTCTTACC
AACCCCTCCCATACCCTTGATTTCCAACCGTTGCTCCCCTTCCCTGCCTTGGA
dot-bracket secondary structure
.......(((..((((((.(((((..((((((((((((.((((((((((.(((((..((((((..((.((((((.......))))))..)))))))).))
)))..)))))))))).))))))))))))...)))))...))))))..)))...
SIMILARITIES| miRBase ghr-MIR2948: 1e-81 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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