ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR2673
source: miRNEST
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CATCTTCCTCTTCCTCTTCTT miRNA* GAATGGAAGGACTAGATT mismatches: 5 bulges: 1 |
pre-miRNA
TTCGATAATCTCATCTTCCTCTTCCTCTTCTTCTATATTAATTTTCACTCCTGCATCCGCAAGCTCCTCGTCGCTTTCCTCCACCACATAACTCTTCGAT
TTGGAGTCGGTGGCGGTGTCAGCCGAGGATGGGATCTTAGCTCCGAGACTTTGGAGATAGTCGCGGAAGAAGGAGAGGGAAGGATCATCAAGAATGGAAG
GACTAGATT
dot-bracket secondary structure
...((.....)).(((...((((((..(((((....(((..(((((.(((((...(((((....((((((..(((..((.(((((.....(((((.....
..))))).))))).))....)))))))))...((.((...((((((....))))))..)))))))))...))))).))))).)))....))))).)))))
)...)))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TTCGATAATCTCATCTTCCTCTTCCTCTTCTTCTATATTAATTTTCACTCCTGCATCCGCAAGCTCCTCGTCGCTTTCCTCCACCACATAACTCTTCGAT
TTGGAGTCGGTGGCGGTGTCAGCCGAGGATGGGATCTTAGCTCCGAGACTTTGGAGATAGTCGCGGAAGAAGGAGAGGGAAGGATCATCAAGAATGGAAG
GACTAGATT
dot-bracket secondary structure
...((.....)).(((...((((((..(((((....(((..(((((.(((((...(((((....((((((..(((..((.(((((.....(((((.....
..))))).))))).))....)))))))))...((.((...((((((....))))))..)))))))))...))))).))))).)))....))))).)))))
)...)))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q93YR3|F10AL_ARATH: 0.00003 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
