ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR413
source: miRNEST
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGTTTCTCTAGTTCTGCAC miRNA* TTAGGACTAGGAAACAGAAA mismatches: 2 bulges: 1 |
pre-miRNA
CTACAGTTTAATGGCATTTAGACATCTGATGTTGGTTTCTCTAGTTCTGCACTTATTCATTTATAGATTGGAAATTTGTATCTTTGTGTTTAGGACTAGG
AAACAGAAAGGTGTTCAAAAGTTCCATTTGGCCTTGG
dot-bracket secondary structure
.....(((.(((((.((((.(((((((....((.(((((.(((((((((.((.....((..((((((((...))))))))....)).)).))))))))))
)))).)).)))))))...)))).))))).))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTACAGTTTAATGGCATTTAGACATCTGATGTTGGTTTCTCTAGTTCTGCACTTATTCATTTATAGATTGGAAATTTGTATCTTTGTGTTTAGGACTAGG
AAACAGAAAGGTGTTCAAAAGTTCCATTTGGCCTTGG
dot-bracket secondary structure
.....(((.(((((.((((.(((((((....((.(((((.(((((((((.((.....((..((((((((...))))))))....)).)).))))))))))
)))).)).)))))))...)))).))))).))).....
SIMILARITIES| miRBase no hits PMRD ghr-miR413: 2e-37 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: ghr-miR413 from PMRD (MNEST048516) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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