ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIRf1281
source: miRNEST
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTGTTTGGTTGCTGAGAAAA miRNA* TTCTCAACAACCAAACGGAGG mismatches: 1 bulges: 0 |
pre-miRNA
TTTGGATGTTTGTGATCCCCATCTGTTTGGTTGCTGAGAAAATTAATCATAGAAGAGTCATATATATATATTAACCAGGTGTTTTGGAATTTGGATTCTT
TTTAATATATAGTACTAAAATGAAGAGTTTTTCAAAAAGGAAGCCTCAAAAACTTTCCTGTTTGTTTTTTTTTTTCCTTAACGTTTTCTCAACAACCAAA
CGGAGGCTCAGAGACAAATCATGC
dot-bracket secondary structure
......(((((.(((.((...((((((((((((.(((((((((........((((((..............(((.((((.(((((.((....((.(((((
(((.......((.(((.........))).))...)))))))).)))).)))))...)))).)))......))))))......))))))))).))))))))
)))))).))).)))))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTTGGATGTTTGTGATCCCCATCTGTTTGGTTGCTGAGAAAATTAATCATAGAAGAGTCATATATATATATTAACCAGGTGTTTTGGAATTTGGATTCTT
TTTAATATATAGTACTAAAATGAAGAGTTTTTCAAAAAGGAAGCCTCAAAAACTTTCCTGTTTGTTTTTTTTTTTCCTTAACGTTTTCTCAACAACCAAA
CGGAGGCTCAGAGACAAATCATGC
dot-bracket secondary structure
......(((((.(((.((...((((((((((((.(((((((((........((((((..............(((.((((.(((((.((....((.(((((
(((.......((.(((.........))).))...)))))))).)))).)))))...)))).)))......))))))......))))))))).))))))))
)))))).))).)))))........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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