ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR166
source: miRNEST
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCC miRNA* AATGTTGTCTGGACCGGGG mismatches: 3 bulges: 0 |
pre-miRNA
TCATTCTGAGGGGAATGTTGTCTGGACCGGGGACACTTGTGTTTCTAATCCGTTTTCCCTGCAATATTGTTCTGATTAACGTGGGGATCTTTATATTGCT
TATTTTTGTAATGGATTAAGGTTGTACTAGTGTCGTCGGACCAGGCTTCATTCCCCCCAATCAT
dot-bracket secondary structure
......((.((((((((..((((((.((((.((((((.(((.((.(((((((((......(((((((......((((........))))...))))))).
.........))))))))).))...))).)))))).)))).))))))..)))))))).)).....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCATTCTGAGGGGAATGTTGTCTGGACCGGGGACACTTGTGTTTCTAATCCGTTTTCCCTGCAATATTGTTCTGATTAACGTGGGGATCTTTATATTGCT
TATTTTTGTAATGGATTAAGGTTGTACTAGTGTCGTCGGACCAGGCTTCATTCCCCCCAATCAT
dot-bracket secondary structure
......((.((((((((..((((((.((((.((((((.(((.((.(((((((((......(((((((......((((........))))...))))))).
.........))))))))).))...))).)))))).)))).))))))..)))))))).)).....
SIMILARITIES| miRBase ghr-MIR166b: 5e-84 PMRD ghr-miR166b: 5e-84 microPC miR166: 1e-78 | UniProt no hits RFAM mir-166: 0.00000000004 | most similar mature miRNAs |
Identical with: ghr-MIR166b from miRBase (MNEST041048) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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