ABOUT THIS RECORDspecies: Gossypium hirsutum
miRNA family: MIR159
source: miRNEST
Taxonomy by NCBI:
Gossypium hirsutum Gossypium Malvoideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGCTGCTTGGCTATGGATCCC miRNA* GCTCCATATCTCAGGAGCTTCA mismatches: 4 bulges: 1 |
pre-miRNA
AAGAAGGTGGGGGGTTAGGAATGGAGCTCCTTGAAGTCAATAGAGTTTCTTGCTGGGTATATTGAGCTGCTTGGCTATGGATCCCACAGTCCTATCCCAT
GGTTGGAGGGATAGGCTTGCGGGCTCCATATCTCAGGAGCTTCATTACCTTTAAAAGTAGAATCCTTGTTTGGATTGGAGGGAGCTCTACATCTTCTCCT
TTCTC
dot-bracket secondary structure
.....((.((((((..(((..(((((((((((....((((..(((.((((....(((((...((((((.((.((.((((((.(((.(((.((((((((..
.......)))))))).))).))).)))))).)).)).))).))).)))))........))))..)))..)))).....)))))))))))..))).)))))
).)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAGAAGGTGGGGGGTTAGGAATGGAGCTCCTTGAAGTCAATAGAGTTTCTTGCTGGGTATATTGAGCTGCTTGGCTATGGATCCCACAGTCCTATCCCAT
GGTTGGAGGGATAGGCTTGCGGGCTCCATATCTCAGGAGCTTCATTACCTTTAAAAGTAGAATCCTTGTTTGGATTGGAGGGAGCTCTACATCTTCTCCT
TTCTC
dot-bracket secondary structure
.....((.((((((..(((..(((((((((((....((((..(((.((((....(((((...((((((.((.((.((((((.(((.(((.((((((((..
.......)))))))).))).))).)))))).)).)).))).))).)))))........))))..)))..)))).....)))))))))))..))).)))))
).)).
SIMILARITIES| miRBase ptc-MIR159c: 7e-16 PMRD ptc-miRf10271-akr: 7e-16 microPC miR159: 3e-18 | UniProt no hits RFAM MIR159: 0.00000000000001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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